Publications


Publications

(As of 07/13/2018, in reverse temporal order.)
Click on the publication to access. Feel free to email me if  you need to access to any of these publications. 
J: Journal, P: Patent, C: Conference, O: Other.
Citation counts (#Cs) for some of the journal publications here are based on google scholar,
Total number of citations = 770, h-index = 13, i10-index = 16, number of citations since 2013 = 513.
Patents:
Peer-reviewed/Refereed Published Journal Papers:

[J09] Sakoglu U, Pearlson GD, Kiehl KA, Wang YM, Michael AM, Calhoun VD,  “A Method for Evaluating Dynamic Functional Network Connectivity and Task-Modulation: Application to Schizophrenia,” Magnetic Resonance Materials in Physics, Biology and Medicine (MAGMA), Special Issue on MR Imaging of Brain Networks, Vol. 23, pp. 351-366 (2010). [#Cs=225, seminal paper on brain’s dynamic functional connectivity analyses for functional MRI (fMRI) data, sliding-window dynamic functional connectivity analysis, along with preceeding conference presentations in 2009; see C13, C15, C16 below]

Peer-reviewed Conference Proceeding Papers, Presentations, Abstracts:


[C54] Sakoglu U, Galla M, Bhamidipati S, Gopinath K, Crosson B, Haley R, “Classification of Gulf War Illness Patients vs Control Veterans Using fMRI Functional Connectivity,” 24th Annual Meeting of the Organization for Human Brain Mapping (OHBM), June 2018, Singapore. 
[C53] Sakoglu U, “Computing Dynamic Functional Connectivity and Task-Modulation Based Features from fMRI Data for Classification,” tutorial presentation at the 8th International Workshop on Pattern Recognition in Neuroimaging (PRNI), June 2018, Singapore. 
[C52] Sakoglu U, Galla M, Gopinath K, Crosson B, Haley R, “Functional Connectivity-Based Classification of Gulf War Illness Patients vs Control Veterans,” 26th Annual Meeting of International Society of Magnetic Resonance in Medicine  (ISMRM), June 2018, Paris, France.  
[C51] Gopinath K, Sakoglu U, Crosson B, Haley R, “Exploratory Group Independent Components Analysis of resting state fMRI data reveals widespread brain function impairments in Gulf War Illness,” 26th Annual Meeting of International Society of Magnetic Resonance in Medicine  (ISMRM), June 2018, Paris, France. 
[C50] Gopinath K, Sakoglu U, Crosson B, Haley R, “Connectomics Correlates of Neurocognitive Deficits in Gulf War Illness Patients: A Resting State fMRI Study,” 26th Annual Meeting of International Society of Magnetic Resonance in Medicine  (ISMRM), June 2018, Paris, France. 
[C49] Sakoglu U, De Leon J, Huerta C, Galla M, Mete M, Adinoff B, “Classification of Cocaine Addiction Using Hilbert-Curve Ordering of fMRI Activations,” International Society of Magnetic Resonance in Medicine (ISMRM) Machine Learning Workshop, March 2018, Pacific Grove, CA.
[C48] Sakoglu U, Galla M, Bhamidipadi S, Gopinath K, Crosson B, Haley R, “Classification of Gulf War Illness Using Machine Learning in fMRI,” International Society of Magnetic Resonance in Medicine (ISMRM) Machine Learning Workshop, March 2018, Pacific Grove, CA.
[C47] Gopinath K, Sakoglu U, Crosson B, Haley R, “Brain function network impairments and abnormal processing at rest in Gulf War Illness: a resting state fMRI study,” Annual International Meeting of the Society for Neuroscience (SfN), 456.09, November 2017, Washington, DC.
[C46] De Leon J, Huerta C, Sakoglu U, “Classification of fMRI Data Using Hilbert-Curve Ordering and Neural Networks,” IEEE DUAL Innovation/Automation Conference, October 2017, NASA JSC, Houston, TX.  (2nd Best Student Poster Presentation Award)
[C45] Bhamidipadi S, Pradeep C, Sakoglu U, “Classification of positive and negative stimuli using EEG data, functional connectivity and machine learning,” IEEE DUAL Innovation/Automation Conference, October 2017, NASA JSC, Houston, TX.
[C44] Galla M, Tippa R, He H, Sakoglu U, “Functional Connectivity–Based Classification of Brain Disorder Patients vs Healthy Participants Using Functional MRI,” IEEE DUAL Innovation/Automation Conference, October 2017, NASA JSC, Houston, TX.
[C43] Gopinath K, Thapa-Chetry B, Ouyang L, Krishnamurthy L, Krishnamurthy V, Goyal A, Gandhi P, Fang, Y, Sakoglu U, Crosson B, Haley R, “Gulf War Illness patients exhibit impaired/abnormal connectivity in multiple brain rsFMRI networks,” Annual International Conference of the Organization for Human Brain Mapping (OHBM), June 2017, Vancouver, BC.
[C41] Sakoglu U, “Dynamic Functional Connectivity-based Classification of Healthy vs Cocaine-Addicted Brains from Functional Magnetic Resonance Imaging Data,” poster, Annual Gulf Coast Consortium Conference on Theoretical and Computational Neuroscience, January 27th, 2017, Rice University, Houston, TX.
[C40] Sakoglu U, “Dynamic Functional Connectivity Analysis For fMRI Data: An Application To Classification Of Cocaine Addicted Patients,” 19th International Conference on Medical Image Computing & Computer Assisted Intervention (MICCAI), Satellite Workshop on Advances in fMRI, October 2016, Athens, Greece.
[C39] LeVan PD, Sakoglu U,LWIR pupil imaging and long-term calibration stability,” SPIE Optics and Photonics Conference, Infrared Sensors and Applications VI, in press, August/September 2016, San Diego, CA.
[C38] Mete M, Sakoglu U, Spence JS, Devous MD, Harris TS, Adinoff B, “Successful Classification of Cocaine Dependence Using Brain Imaging: A Machine Learning Approach,” Midsouth Computational Biology and Bioinformatics Society Conference (MCBIOS), March 2016, Memphis, TN.
[C37] LeVan PD, Sakoglu U, Stegall M, Pierce G,LWIR pupil imaging for long-term infrared background compensation for faint objects,” SPIE Optics and Photonics Conference, Infrared Sensors and Applications V, pp. 96090U1–96090U9, August 9-13, 2015, San Diego, CA.
[C36] Hempelmann C, Gurupur V, Sakoglu U, “Patient Centered Ontology Development for a Personal Health Information System,” American Medical Informatics Association (AMIA), 2015 Joint Summits on Translational Science, pp. 330-331, March 23-27, 2015, San Francisco, CA.
[C33] Flores H, Bohra K, Arslan AN, Sakoglu U, “Finding Optimal Brain Mappings Using Integer Linear Programming Solvers,” Midsouth Computational Biology and Bioinformatics Society Conference (MCBIOS), March 2014, Stillwater, OK.
[C32] Esquivel J, Mete M, Sakoglu U, “DynaConn: A Software for Analyzing Brain’s Dynamic Functional Connectivity from fMRI Data,” Midsouth Computational Biology and Bioinformatics Society Conference (MCBIOS), March 2014, Stillwater, OK.
[C31] Bohra K, Sakoglu U, Mete M, “Software Toolbox for Multivariate Pattern Analysis of Different Brain States from Functional Magnetic Resonance Imaging Data,” Midsouth Computational Biology and Bioinformatics Society Conference (MCBIOS), March 2014, Stillwater, OK. (2nd best poster award)
[C30] Ankam H, Mete M, Sakoglu U, “A Compact Independent Component Analysis Implementation with Graphical Processing,” Midsouth Computational Biology and Bioinformatics Society Conference (MCBIOS), March 2014, Stillwater, OK.
[C29] Akgun D, Esquivel J, Mete M, Sakoglu U, “OpenMP-Accelerated Dynamic Functional Connectivity Analysis on Multicore Computer,” Midsouth Computational Biology and Bioinformatics Society Conference (MCBIOS), March 2014, Stillwater, OK.
[C24] Wang TH, Johnson JJ, Sakoglu U, Rugg MD, “Content-selective cortical reinstatement effects in older and younger adults,” Cognitive Neuroscience Annual Meeting, April 2013, San Francisco, CA.

Other Publications: